Bifalgorithm post · Latest research covid · ARTICLE IN PRESS

Gene Enrichment

Gene Enrichment (Latest research covid · ARTICLE IN PRESS) — "To address the putative protective mechanisms of the ADCC mAb 5SB12 against SARS-CoV-2 infection,…

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  • ADCC mAb 5SB12 may protect against SARS-CoV-2 infection through transcriptional, immune, and protein-modification mechanisms.
  • Functional enrichment analysis was conducted to investigate the putative protective mechanisms of 5SB12.
  • Comparison of infected −/− and −/+ samples showed enrichment of “Regulation of interleukin-12 production” among upregulated genes.
  • Infected samples pretreated with 5SB12 showed enrichment of “Regulation of viral transcription” and “Negative regulation of viral transcription.”
  • The upregulated genes Trim13 and Zfp36 were included in the enriched viral-transcription gene sets.
  • Negative regulation of viral transcription may help prevent further viral replication inside host cells.
  • The “Monocyte activation” gene set was enriched in the analyzed samples.
  • Gene sets involving protein modification were also enriched.
  • Enriched protein-modification terms included “Protein deglycosylation,” “Protein demannosylation,” and “Endoplasmic reticulum mannose trimming.”
  • 5SB12 pretreatment was associated with contrasting changes in NK-cell receptor genes.
  • Klrk1, which encodes an activating NK-cell receptor, was upregulated in the +/+ treatment group.
  • Tigit, which inhibits NK-cell cytotoxic activity through direct inhibitory signals, was significantly downregulated after 5SB12 pretreatment.
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Gene Enrichment

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Latest research covid

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"To address the putative protective mechanisms of the ADCC mAb 5SB12 against SARS-CoV-2 infection, functional enrichment analysis was conducted, particularly between the infected −/+ and +/+ samples. To verify the effect of SARS-CoV-2 infection, we examined the differentially expressed genes between −/− and −/+ groups using a gene set enrichment analysis approach and found that the biological process GO term “Regulation of interleukin-12 production” was enriched by upregulated genes. Focusing on the virus-infected samples, the gene set terms “Regulation of viral transcription” and “Negative regulation of viral transcription,” including the upregulated genes Trim13 and Zfp36, were enriched in samples pretreated with 5SB12 mAb. This indicates that viral transcription activities were negatively regulated in ADCC mAb-pretreated samples, potentially contributing to the prevention of further viral replication inside host cells. Additionally, the “Monocyte activation” gene set was enriched. GO terms involving protein modification were also enriched, including “Protein deglycosylation,” “Protein demannosylation,” and “Endoplasmic reticulum mannose trimming.” Aside from GO terms, the Klrk1 gene, which encodes an activating receptor on NK cells, was upregulated in the +/+ treatment group. In contrast, the Tigit gene, a key component that inhibits cytotoxic activity by delivering direct inhibitory signals to NK cells, was significantly downregulated with 5SB12 mAb pretreatment."

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